| PATH_GI_TAX |
/home/pszczesny/workingdata/refseq/db/tax_id/gi_taxid_nucl.dmp |
| PATH_TAX_NAME |
/home/pszczesny/workingdata/refseq/db/tax_id/names.dmp |
| PATH_RAPSEARCH |
/home/pszczesny/soft/RAPSearch2.12_64bits/bin/rapsearch |
| PATH_REF_PROT_MASL28 |
/home/pszczesny/storage/workingdata/rapsearch/masl28 |
| PATH_REF_PROT_KO |
/home/pszczesny/soft/KEGG/ko.pep.rapsearch.db |
| PATH_REF_PROT_ELSE |
/home/pszczesny/workingdata/refseq/protein/refseq_protein |
| PATH_USEARCH |
/home/pszczesny/soft/usearch |
| PATH_FQ2FA |
/usr/local/bioinformatics/fastx_toolkit/bin/fastq_to_fasta |
| PATH_HUMANN |
/home/pszczesny/soft/humann-0.99 |
| PATH_HUMANN_DATA |
/home/pszczesny/soft/humann-0.99/input/hmp_metadata.dat |
| PATH_BOWTIE2 |
/home/pszczesny/bin/bowtie2 |
| PATH_VELVETH |
/home/pszczesny/soft/Velvet/velveth |
| PATH_VELVETG |
/home/pszczesny/soft/Velvet/velvetg |
| PATH_METAVELVETG |
/home/pszczesny/soft/MetaVelvet/meta-velvetg |
| PATH_MEGAHIT |
/home/pszczesny/soft/megahit/megahit |