Configuration File

All commands may be presented in a configuration file fed to bipype with @ prefix. A file with configuration should contain all desired commands and their options (if applicable) one per line.

Example 1

bipype @fancy_filename

Content of file with fancy filename:

-e
--mode run
--threads 4
--output_type 'ITS'

So, this is equivalent to

bipype -e --mode run --threads 4 --output_type 'ITS'

Example 2

bipype @another_fancy_filename

Content of file with another fancy filename

--mode run
--threads 4

So, this is equivalent to

bipype -e --mode run --threads 4 --output_type 'ITS'