Configuration File¶
All commands may be presented in a configuration file fed to bipype with @ prefix. A file with configuration should contain all desired commands and their options (if applicable) one per line.
Example 1¶
bipype @fancy_filename
Content of file with fancy filename:
-e
--mode run
--threads 4
--output_type 'ITS'
So, this is equivalent to
bipype -e --mode run --threads 4 --output_type 'ITS'
Example 2¶
bipype @another_fancy_filename
Content of file with another fancy filename
--mode run
--threads 4
So, this is equivalent to
bipype -e --mode run --threads 4 --output_type 'ITS'